All the 450k data are arranged in the format of annotation file.
| Disease | Link |
|---|---|
| Acute Myeloid Leukemia[LAML] | LAML |
| Adrenocortical carcinoma[ACC] | ACC |
| Bladder Urothelial Carcinoma[BLCA] | BLCA |
| Brain Lower Grade Glioma[LGG] | LGG |
| Breast invasive carcinoma[BRCA] | BRCA |
| Cervical squamous cell carcinoma and endocervical adenocarcinoma[CESC] | CESC |
| Cholangiocarcinoma[CHOL] | CHOL |
| Colon adenocarcinoma[COAD] | COAD |
| Esophageal carcinoma[ESCA] | ESCA |
| Glioblastoma multiforme[GBM] | GBM |
| Head and Neck squamous cell carcinoma[HNSC] | HNSC |
| Kidney Chromophobe[KICH] | KICH |
| Kidney renal clear cell carcinoma[KIRC] | KIRC |
| Kidney renal papillary cell carcinoma[KIRP] | KIRP |
| Liver hepatocellular carcinoma[LIHC] | LIHC |
| Lung adenocarcinoma[LUAD] | LUAD |
| Lung squamous cell carcinoma[LUSC] | LUSC |
| Lymphoid Neoplasm Diffuse Large B-cell Lymphoma[DLBC] | DLBC |
| Mesothelioma[MESO] | MESO |
| Ovarian serous cystadenocarcinoma[OV] | OV |
| Pancreatic adenocarcinoma[PAAD] | PAAD |
| Pheochromocytoma and Paraganglioma[PCPG] | PCPG |
| Prostate adenocarcinoma[PRAD] | PRAD |
| Rectum adenocarcinoma[READ] | READ |
| Sarcoma[SARC] | SARC |
| Skin Cutaneous Melanoma[SKCM] | SKCM |
| Stomach adenocarcinoma[STAD] | STAD |
| Testicular Germ Cell Tumors[TGCT] | TGCT |
| Thymoma[THYM] | THYM |
| Thyroid carcinoma[THCA] | THCA |
| Uterine Carcinosarcoma[UCS] | UCS |
| Uterine Corpus Endometrial Carcinoma[UCEC] | UCEC |
| Uveal Melanoma[UVM] | UVM |
All the 27k data are arranged in the format of annotation file.
| Disease | Link |
|---|---|
| Breast invasive carcinoma[BRCA] | BRCA |
| Colon adenocarcinoma[COAD] | COAD |
| Glioblastoma multiforme[GBM] | GBM |
| Kidney renal clear cell carcinoma[KIRC] | KIRC |
| Kidney renal papillary cell carcinoma[KIRP] | KIRP |
| Lung adenocarcinoma[LUAD] | LUAD |
| Lung squamous cell carcinoma[LUSC] | LUSC |
| Ovarian serous cystadenocarcinoma[OV] | OV |
| Rectum adenocarcinoma[READ] | READ |
| Stomach adenocarcinoma[STAD] | STAD |
| Uterine Corpus Endometrial Carcinoma[UCEC] | UCEC |
All the 450k data are arranged in the format of annotation file. 27k data are arranged in the format of annotation file. RRBS data are arranged in the format of annotation file.
| Disease | GES ID | Link |
|---|---|---|
| Acute Myeloid Leukemia[LAML] | GSE58477 | Acute Myeloid Leukemia[LAML] |
| Adrenocortical carcinoma[ACC] | GSE60043 | Adrenocortical carcinoma[ACC] |
| Alcohol Use Disorders | GSE49393 | Alcohol Use Disorders |
| Anal cancer | GSE17648 | Anal cancer |
| Asthmatic | GSE40576 | Asthmatic |
| Atherosclerotic lesion | GSE46394 | Atherosclerotic lesion |
| autism | GSE53162 | autism |
| Bile duct cancer | GSE49656 | Bile duct cancer |
| Bipolar Disorder (BD) | GSE38873 | Bipolar Disorder (BD) |
| Bladder cancer | GSE37816 | Bladder cancer |
| Brain Lower Grade Glioma[LGG] | GSE41826 | Brain Lower Grade Glioma[LGG] |
| Cardial cancer | GSE42510 | Cardial cancer |
| Carotid atherosclerotic | GSE46394 | Carotid atherosclerotic |
| Chronic Physical Aggression | GSE53191 | Chronic Physical Aggression |
| Cornelia de Lange syndrome | GSE18458 | Cornelia de Lange syndrome |
| Crohn's disease | GSE32146 | Crohn's disease |
| diabetic nephropathy in type 1 diabetes mellitus | GSE20067 | diabetic nephropathy in type 1 diabetes mellitus |
| Down syndrome | GSE50586 | Down syndrome |
| early onset preeclampsia | GSE44667 | early onset preeclampsia |
| esophageal squamous cell carcinoma | GSE52826 | esophageal squamous cell carcinoma |
| Gastric cancer | GSE25869 | Gastric cancer |
| Germ cell cancer | GSE56382 | Germ cell cancer |
| Hutchinson-Gilford Progeria Syndrome | GSE42865 | Hutchinson-Gilford Progeria Syndrome |
| Kidney Chromophobe[KICH] | GSE59157 | Kidney Chromophobe[KICH] |
| Malignant pluripotent embryonal carcinoma | GSE42646 | Malignant pluripotent embryonal carcinoma |
| meningiomas | GSE42882 | meningiomas |
| Multiple myeloma | GSE21304 | Multiple myeloma |
| Multiple Sclerosis (MS) | GSE40360 | Multiple Sclerosis (MS) |
| myelodysplastic syndrome | GSE51758 | myelodysplastic syndrome |
| nasopharyngeal carcinoma | GSE52068 | nasopharyngeal carcinoma |
| Neuroblastoma | GSE39626 | Neuroblastoma |
| nonalcoholic fatty liver disease | GSE49542 | nonalcoholic fatty liver disease |
| Obesity | GSE44763 | Obesity |
| oral squamous cell carcinoma | GSE50586 | oral squamous cell carcinoma |
| Ovarian serous cystadenocarcinoma[OV] | GSE51820 | Ovarian serous cystadenocarcinoma[OV] |
| Pancreatic cancer | GSE40097 | Pancreatic cancer |
| Pancreatic Neoplasms | GSE67205 | Pancreatic Neoplasms |
| Pancreatitis | GSE67205 | Pancreatitis |
| Parkinson's Disease | GSE51921 | Parkinson's Disease |
| periodontitis | GSE53849 | periodontitis |
| pilocytic astrocytoma tumor | GSE44684 | pilocytic astrocytoma tumor |
| Posttraumatic stress disorder | GSE21282 | Posttraumatic stress disorder |
| Prostate cancer | GSE23388 | Prostate cancer |
| Rheumatoid arthritis | GSE42861 | Rheumatoid arthritis |
| Silver Russell patient | GSE55491 | Silver Russell patient |
| Systemic lupus erythematosus | GSE82218 | Systemic lupus erythematosus |
| Trisomy 18 | GSE66210 | Trisomy 18 |
| Type 2 diabetes | GSE76285 | Type 2 diabetes |
| ulcerative colitis | GSE32146 | ulcerative colitis |
| Uterine Carcinosarcoma[UCS] | GSE45187 | Uterine Carcinosarcoma[UCS] |
| Wilms tumor | GSE59157 | Wilms tumor |
| Data Type | Information | Link |
|---|---|---|
| WGBS data | WGBS data from TCGA | WGBS |
| RRBS, MeDIP_data | RRBS, MeDIP_data ,MREs used in DiseaseMeth version 2.0 | RRBS, MeDIP_data |
| curated methylation data | this data are extracted in the promoter region from 175 data set | curated methylation data |
| curated disesase-gene data | this data are from paper or differential analysis | curated disease-gene data |
| disesase-gene data from DisGeNET | this data are from DisGeNET | disease-gene data from DisGeNET |